SMITH
OverviewWithin the concept phase of the Medical Informatics Funding Scheme of the Federal Ministry of Education and Research (BMBF), the university hospitals in Aachen, Jena, Leipzig, Hamburg, Bonn, Essen and Halle are involved and funded. Their aim within the scope of SMITH is the development of an innovative structure for cross-institutional linking and exchange of healthcare and research data between sites and beyond.
Programme: This Project is not associated with a Programme
LHA-ID: 81CN2DP7WT-9
Funding codes:- 01ZZ1803A
Public web page: https://www.smith.care/
Organisms: No Organisms specified
Human Diseases: No Human Disease specified
Health Atlas PALs: Markus Löffler
Project Coordinators: No Project coordinators for this Project
Project start date: 1st Jan 2018
Related items
Projects: Leipzig Health Atlas, LIFE Adult, LIFE- Leipzig Research Center for Civilization Diseases, LIFE Head and Neck Cancer Group, LIFE Heart, Molecular mechanisms in malignant lymphoma, German Lymphoma Alliance (GLA), Molecular Mechanisms in Malignant Lymphomas - Demonstrators of Personalized Medicine, Individualized model-based managing of the next-cycle thrombopenia of CHOEP/CHOP treated patients based on platelets dynamics during the previous cycles, German Consortium for Hereditary Breast and Ovarian Cancer, German Consortium for Hereditary Non-Polyposis Colorectal Cancer, MMML-MYC-SYS, Natural Language Processing for Clinical Research, Genetical Statistics and Systems Biology, German Competence Network Sepsis (SepNet), LIFE Child, Genomic and transcriptomic heterogeneity of colorectal tumours arising in Lynch syndrome, German Glioma Network, Footprints of Sepsis Framed Within Community Acquired Pneumonia in the Blood Transcriptome, ProstataCA, SMITH, COVID-19 Leipzig
Institutions: Institute for Medical Informatics, Statistics and Epidemiology
https://orcid.org/0000-0001-8344-0658
Projects: Molecular Mechanisms in Malignant Lymphomas - Demonstrators of Personalized Medicine, German Lymphoma Alliance (GLA), LIFE Head and Neck Cancer Group, LIFE- Leipzig Research Center for Civilization Diseases, MMML-MYC-SYS, LIFE Adult, Molecular mechanisms in malignant lymphoma, German Competence Network Sepsis (SepNet), HaematoSys - Systems biology of haematopoiesis and haematopoietic neoplasia, SMITH, Leipzig Health Atlas
Institutions: Institute for Medical Informatics, Statistics and Epidemiology
Prof. Dr. Markus Löffler
Universität Leipzig
Institut für Medizinische Informatik, Statistik und Epidemiologie
Härtelstraße 16-18
04107 Leipzig
Snapshots: No snapshots
We evaluated if the PhenoMan returns correct/complete result sets and if it is working with real data. To simulate a FHIR health data store with real data we used Synthea(TM) to generate a large data set and imported it into a HAPI FHIR JPA Server. Based on the synthetic data set we developed ten example queries with different structure and complexity with PhenoMan and SQL. We compared the results of the queries in means of execution time and equality of results.
The detailed steps of the evaluation
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This assay bundles all synthetic FHIR data of the PhenoMan evaluation. The data arised from a subset of a Synthea(TM) generated data set.
We truncated some resource types like Encounter and Provider to reduce the size of the data set and to speed up the import in a FHIR health data store.
Submitter: Christoph Beger
Assay type: Result Dataset of Clinical Study
Technology type: Technology Type
Snapshots: No snapshots
Submitter: Alexandr Uciteli
Biological problem addressed: Model Analysis Type
Snapshots: No snapshots
We modelled the algorithm for determining Type 2 Diabetes Mellitus (T2DM) cases presented by PheKB.org using Phenotype Manager (PhenoMan).
Submitter: Alexandr Uciteli
Biological problem addressed: Model Analysis Type
Snapshots: No snapshots
T2DM Phenotype Algorithm Specification Ontology (PASO) developed using PhenoMan
Download
The tabular representation of the T2DM phenotype algorithm generated by PhenoMan using the T2DM ontology
Example Reasoner Report generated by PhenoMan
Example Reasoner Report generated by PhenoMan
Abstract
Authors: Udo Hahn, Michel Oleynik
Date Published: 21st Aug 2020
Publication Type: Journal article
Abstract
Authors: Miriam Kesselmeier, Norbert Benda, André Scherag
Date Published: 14th Aug 2020
Publication Type: Journal article
Abstract
Authors: Jimmy Huang, Yi Chang, Xueqi Cheng, Jaap Kamps, Vanessa Murdock, Ji-Rong Wen, Yiqun Liu, Erik Faessler, Michel Oleynik, Udo Hahn
Date Published: 25th Jul 2020
Publication Type: InProceedings
Abstract (Expand)
Authors: F. Borchert, C. Lohr, L. Modersohn, T. Langer, M. Follmann, J. P. Sachs, U. Hahn, M. P. Schapranow
Date Published: 13th Jul 2020
Publication Type: Misc
Abstract (Expand)
Authors: M. Lobe, F. Matthies, S. Staubert, F. A. Meineke, A. Winter
Date Published: 16th Jun 2020
Publication Type: Journal article
Presentation on JOWO/ODLS 2019 in Graz
Creators: Christoph Beger, Alexandr Uciteli
Submitter: Christoph Beger
The Joint Ontology WOrkshops (JOWO) is a venue of workshops that, together, address a wide spectrum of topics related to ontology research, ranging from Cognitive Science to Knowledge Representation, Natural Language Processing, Artificial Intelligence, Logic, Philosophy, and Linguistics.
Country: 
Austria
City: Graz
