PhenoMan Evaluation with Synthetic FHIR Data

Description:

We evaluated if the PhenoMan returns correct/complete result sets and if it is working with real data. To simulate a FHIR health data store with real data we used Synthea(TM) to generate a large data set and imported it into a HAPI FHIR JPA Server. Based on the synthetic data set we developed ten example queries with different structure and complexity with PhenoMan and SQL. We compared the results of the queries in means of execution time and equality of results.

The detailed steps of the evaluation can be found in our public GitHub repository: Onto-Med/phenoman-evaluation.

LHA-ID: 82UY638KN5-7

Ontology-based Phenotyping

Projects: Leipzig Health Atlas, Onto-Med Research Group, SMITH

Christoph Beger

Study type: Not specified

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Created: 29th Jun 2020 at 14:53

Last updated: 29th Jun 2020 at 15:31

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