PhenoMan Evaluation - Observation FHIR Resources Version 1
This data file contains FHIR bundles of observation resources, which were used for the evaluation of the PhenoMan. Originally the observation data were generated with Synthea(TM) and truncated to reduce overall size and import times into a HAPI FHIR JPA Server. Please import the patient resources prior to the observations.
This data file contains 8,026,380 observations.
LHA ID: 82VCG8Q37G-1
Filename:
Observation.tar.gz
Format: Gzip archive
Size: 124 MB
Data file type: Clinical Data
Human Diseases: Obesity, Bronchial disease, Asthma, Hypertension
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Created: 30th Jun 2020 at 15:48
Last updated: 30th Jun 2020 at 15:57
Last used: 28th Sep 2021 at 05:48
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Version 1 Created 30th Jun 2020 at 15:48 by Christoph Beger
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The Onto-Med Research Group conducts basic research in formal ontology, designs formal tools for constructing and managing ontologies and develops top level ontologies as well as domain and core ontologies for medicine, bio-medicine and biology, but also for other fields. The Onto-Med group uses an interdisciplinary approach, combining methods from logic, computer science, philosophy and cognitive linguistics. The Onto-Med group considers Formal Ontology as an evolving science which is concerned ...
Programme: This Project is not associated with a Programme
Public web page: http://www.onto-med.de
Start date: 1st Jan 2002
Submitter: Alexandr Uciteli
Studies: Ontological Modelling of Basic Eligibility Criteria, Ontological Modelling of Type 2 Diabetes Mellitus (T2DM) Phenotype, PhenoMan Evaluation with Synthetic FHIR Data
Resources: Basic Eligibility Criteria of an Example Blood Pressure Study, Ontological Modelling of T2DM Phenotype using Phenotype Manager (PhenoMan), PhenoMan Evaluation - Synthetic FHIR Data
We evaluated if the PhenoMan returns correct/complete result sets and if it is working with real data. To simulate a FHIR health data store with real data we used Synthea(TM) to generate a large data set and imported it into a HAPI FHIR JPA Server. Based on the synthetic data set we developed ten example queries with different structure and complexity with PhenoMan and SQL. We compared the results of the queries in means of execution time and equality of results.
The detailed steps of the evaluation ...
Submitter: Christoph Beger
Investigation: Ontology-based Phenotyping
Resources: PhenoMan Evaluation - Synthetic FHIR Data
Study type: Not specified
This assay bundles all synthetic FHIR data of the PhenoMan evaluation. The data arised from a subset of a Synthea(TM) generated data set. We truncated some resource types like Encounter and Provider to reduce the size of the data set and to speed up the import in a FHIR health data store.
Submitter: Christoph Beger
Resource type: Result Dataset of Clinical Study
Technology type: Technology Type
Investigation: Ontology-based Phenotyping
Projects: LHA - Leipzig Health Atlas, Onto-Med Research Group, SMITH - Smart Medical Information Technology for Healthcare, COVID-19 Leipzig, LIFE Child, LIFE - Leipzig Research Center for Civilization Diseases
Institutions: Institute for Medical Informatics, Statistics and Epidemiology (IMISE), Universitätsklinikum Leipzig, AöR
https://orcid.org/0000-0002-1166-0368
Taxonomy URI: http://purl.obolibrary.org/obo/DOID_10763
Synonyms: HTN, vascular hypertensive disorder, hyperpiesia, hypertensive disease, High blood pressure (& [essential hypertension])
Definitions: An artery disease characterized by chronic elevated blood pressure in the arteries.
Taxonomy URI: http://purl.obolibrary.org/obo/DOID_2841
Synonyms: bronchial hyperreactivity, Exercise induced asthma, chronic obstructive asthma with acute exacerbation, chronic obstructive asthma with status asthmaticus, chronic obstructive asthma, exercise-induced asthma
Definitions: A bronchial disease that is characterized by chronic inflammation and narrowing of the airways, which is caused by a combination of environmental and genetic factors. The disease has_symptom recurring periods of wheezing (a whistling sound while breathing), has_symptom chest tightness, has_symptom shortness of breath, has_symptom mucus production and has_symptom coughing. The symptoms appear due to a variety of triggers such as allergens, irritants, respiratory infections, weather changes, exercise, stress, reflux disease, medications, foods and emotional anxiety., Xref MGI.
Taxonomy URI: http://purl.obolibrary.org/obo/DOID_1176
Synonyms: Bronchospasm
Definitions: A lower respiratory tract disease that affects the airways leading into the lungs, which is caused due to inflammation of the bronchi and bronchioles, infection, or blockage.
Taxonomy URI: http://purl.obolibrary.org/obo/DOID_9970
Definitions: OMIM mapping confirmed by DO. [SN].
