To provide data input and result from a scRNA-Seq integration workflow
For our R-based workflow on GitHub pulmonologists_interspecies_scRNA
, we here provide the required scRNA-Seq input data, four Seurat RDS files.
Mouse: s511_1_diet_mouse.RDS
,, own data created for the manuscript
Hamster:s511_1_diet_hamster.RDS
, reformated data of naïve controls from publication Nouailles G, Wyler E, Pennitz P, et al. Temporal omics analysis in Syrian hamsters unravel cellular effector responses to moderate COVID-19. Nat Commun 2021; 12: 4869.
Human Travagli: s511_1_diet_human_travaglini.RDS
,reformated data of patient 2 from Travaglini KJ, Nabhan AN, Penland L, et al. A molecular cell atlas of the human lung from single-cell RNA sequencing. Nature 2020; 587: 619-25.
Human Charite: s511_1_diet_human_charite.RDS
, own data created for the manuscript.
We also provide processed resulting annotated integrated Seurat file:
s1_3_human_mouse_hamster_integrated.RDS
LHA ID: 88KGR6281K-6
Experimental assay
Projects: Genetical Statistics and Systems Biology, LIFE Adult, LIFE Heart
Investigation: OMICS Investigations
Study: scRNA-Seq across species for pulmonologists
Assay position:
Resource type: Experimental Assay Type
Technology type: Technology Type
Human Diseases: No human diseases
Creator
Submitter
Views: 4053
Created: 9th Sep 2021 at 09:26
Last updated: 26th Sep 2022 at 10:01