| Number of samples: | 275 (all replicates: 275) |
| Number of categories: | 4 |
| Number of genes: | 16952 |
| Analysis finished: | Do Mai 22 02:39:49 2014 CEST |
| Dimension 1st level SOM: | 50x50 |
| Dimension 2nd level SOM: | 50x50 |
| 1st Level SOM Analysis | |
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| These reports show the collection of first level SOM images of all tissue samples. Alternative SOM images are shown with different color scales and also as rank SOM using FC-, WAD-, and Shrinkage-t-scores. Further, supporting maps, entropy and topology profiles provide supplementary information about the 1st level SOM. | 1st level SOM expression images alternative color scales rank profiles |
| 1st level SOM expression images - group specific | |
| Supporting Maps | |
| Entropy Profiles Topology Profiles |
| Sample Summaries | |
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| For each sample a report sheet is created which summarizes the most relevant information. | browse sample report sheets |
| Gene Set Enrichment Analysis | |
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| Enrichment of predefined gene sets in the samples is calculated and visualized as heatmaps, profile plots and population maps. | browse geneset analysis results |
| 2nd Level Metagene Analysis | |
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| Several agglomerative methods based either on distance or on correlation metrics are applied to the samples using filtered subsets of metagenes.
The reports show cluster heatmaps and dendrograms, pairwise correlation maps, correlation spanning trees and ICA results. |
Second level SOM |
| Similarity based methods ( Neighbor Joining & Hierarchical Clustering ) | |
| Correlation based methods ( MST, Correlation Graphs, PCM ) | |
| Component based methods ( 2d-ICA, 3d-ICA ) |
| 3rd Level Spot Analysis | |
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| Different criteria of spot selection such as overexpression or mutual correlations between the metagenes where applied. Summary sheets of integral SOM maps and subsequent analyses base on this third level information. | browse spot report sheets |