Models

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NLP for Clinical Research Tool

Das NLP4CR-Tool ist ein Prototyp, der die Anwendbarkeit von Apache UIMA und cTakes auf medizinische Volltexte in deutscher Sprache zeigt.

n.a.

2018-07-05

Goldberg C

Obesity of Adults in Leipzig

We mapped anthropometric data the large LIFE Adult population (10,000 participants) onto the Leipzig map. In particular, we derived the body mass index (BMI) taking measured body height and weight int...

n.a.

oposSOM

Analysis of large-scale molecular biological data using self-organizing maps

n.a.

2015-10-01

Löffler-Wirth H

PREMM1,2,6

"PREMM1,2,6" is a logistic regression model. It calculates the risk of having a mutation in the mismatch repair genes MLH1, MSH2 and MSH6 (for single genes and overall) based on the personal and famil...

hereditary breast ov...

n.a.

PREMM5

"PREMM5" is a logistic regression model. It calculates the risk of having a mutation in the mismatch repair genes MLH1, MSH2/EPCAM, MSH6 and PMS2 (for single genes and overall) based on the personal a...

hereditary breast ov...

n.a.

Reference Data for Hand Grip Strength

Based on the large LIFE Adult population (10,000 participants) we generated reference data of hand grip strength using the widely accepted GAMLSS method. These data are the basis for the software appl...

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scrat

We have developed a suite of Single Cell R-Analysis Tools (SCRAT) based on self-organizing maps (SOMs) to deconstruct cellular heterogeneity, reconstruct lineage relationships, and perform gene set en...

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2017-01-05

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Searching for Data Elements in Studies hosted by the LHA

We provide the LHA data portal allowing to searching and accessing data elements in single study or research project and over all studies. The metadata are mapped to public ontologies, such as include...

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Shiny application for managing next-cycle thrombopenia of CHOEP/CHOP treated patients

Fitting available individual patients information, prediction of next-cycle thrombopenia caused by CHOEP treatment based on the individual fits of the preceeding treatment cycles, changing next-cycle ...

non-Hodgkin lymphoma

n.a.

Yuri Kheifetz

Simple Ontology Loader in Drupal (SOLID)

This is a Drupal 8 Module to import nodes and taxonomies into Drupal, using the available API. The module is capable of importing a JSON or OWL file. Idea is to enable users to upload a file containin...

n.a.

2018-04-25

Beger C

Models

NLP for Clinical Research Tool

Obesity of Adults in Leipzig

oposSOM

PREMM1,2,6

PREMM5

Reference Data for Hand Grip Strength

scrat

Searching for Data Elements in Studies hosted by the LHA

Shiny application for managing next-cycle thrombopenia of CHOEP/CHOP treated patients

Simple Ontology Loader in Drupal (SOLID)

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Leipzig Health Atlas

Registered Repository

acantholytic variant squamous cell breast carcinoma
acinic cell breast carcinoma
acquired metabolic disease
acromegaly
Addison's disease
adenosquamous breast carcinoma
adrenal cortex disease
adrenal cortical hypofunction
adrenal gland disease
adrenal gland hyperfunction
adrenocorticotropic hormone deficiency
agnathia-otocephaly complex
Alzheimer's disease
anencephaly
apocrine adenosis of breast
artery disease
atypical breast papilloma
autosomal dominant disease
autosomal genetic disease
axillary lipoma
bacterial infectious disease
bacterial sepsis
B-cell lymphoma
benign breast adenomyoepithelioma
benign breast phyllodes tumor
benign eccrine breast spiradenoma
benign mammary dysplasia
bilateral breast cancer
bladder exstrophy-epispadias-cloacal exstrophy complex
blunt duct adenosis of breast
brain cancer
brain disease
brain glioma
breast abscess
breast adenocarcinoma
breast adenoid cystic carcinoma
breast adenoma
breast adenomyoepithelial adenosis
breast adenomyoepithelioma
breast angiomatosis
breast angiosarcoma
breast apocrine adenoma
breast apocrine carcinoma
breast benign neoplasm
breast cancer
breast capillary hemangioma
breast carcinoma
breast columnar cell mucinous carcinoma
breast cyst
breast cystic hypersecretory carcinoma
breast disease
breast ductal adenoma
breast ductal carcinoma
breast duct papilloma
breast epithelioid hemangioma
breast fibroadenoma
breast fibroadenosis
breast fibrocystic disease
breast fibrosarcoma
breast giant fibroadenoma
breast granular cell tumor
breast hemangioma
breast hemangiopericytoma
breast intracanalicular fibroadenoma
breast intraductal papillomatosis
breast intraductal proliferative lesion
breast juvenile papillomatosis
breast large cell neuroendocrine carcinoma
breast leiomyoma
breast leiomyosarcoma
breast lipoma
breast liposarcoma
breast lobular carcinoma
breast lymphoma
breast malignant eccrine spiradenoma
breast malignant phyllodes tumor
breast medullary carcinoma
breast metaplastic carcinoma
breast mucinous carcinoma
breast mucinous cystadenocarcinoma
breast mucoepidermoid carcinoma
breast myoepithelial carcinoma
breast myoepithelial neoplasm
breast myoepitheliosis
breast myofibroblastoma
breast neuroendocrine neoplasm
breast osteosarcoma
breast papillary carcinoma
breast papillomatosis
breast pericanalicular fibroadenoma
breast rhabdomyosarcoma
breast sarcoma
breast scirrhous carcinoma
breast secretory carcinoma
breast signet ring cell adenocarcinoma
breast squamous cell carcinoma
cancer
carbohydrate metabolism disease
cardiac tamponade
cardiovascular system disease
cell type cancer
central breast papilloma
central nervous system cancer
central nervous system disease
chest wall lipoma
chronic rheumatic pericarditis
cleft lip
cleft palate
cleft palate-lateral synechia syndrome
cleft soft palate
cloacal exstrophy
cognitive disorder
colon cancer
colonic disease
colorectal cancer
congenital adrenal insufficiency
congenital nervous system abnormality
constrictive pericarditis
coronary artery disease
corticosteroid-binding globulin deficiency
cribriform carcinoma
cryptorchidism
dementia
developmental disorder of mental health
diabetes mellitus
diffuse large B-cell lymphoma
disease
disease by infectious agent
disease of anatomical entity
disease of cellular proliferation
disease of mental health
disease of metabolism
Dressler's syndrome
eating disorder
ectopic Cushing syndrome
Ehrlich tumor carcinoma
empty sella syndrome
endocrine gland cancer
endocrine system disease
estrogen-receptor negative breast cancer
estrogen-receptor positive breast cancer
fat necrosis of breast
female breast axillary tail cancer
female breast cancer
female breast carcinoma
female breast central part cancer
female breast lower-inner quadrant cancer
female breast lower-outer quadrant cancer
female breast nipple and areola cancer
female breast upper-inner quadrant cancer
female breast upper-outer quadrant cancer
female reproductive organ cancer
female reproductive system disease
fibrosclerosis of breast
flat ductal epithelial atypia
gastrointestinal system cancer
gastrointestinal system disease
gastroschisis
genetic disease
glucocorticoid-remediable aldosteronism
glucose metabolism disease
glycogen-rich clear cell breast carcinoma
gonadal disease
head and neck cancer
heart disease
hematologic cancer
hematopoietic system disease
hemopericardium
hepatobiliary disease
Her2-receptor negative breast cancer
Her2-receptor positive breast cancer
hereditary breast ovarian cancer syndrome
histoplasmosis pericarditis
holoprosencephaly
holoprosencephaly 1
holoprosencephaly 11
holoprosencephaly 2
holoprosencephaly 3
holoprosencephaly 4
holoprosencephaly 5
holoprosencephaly 6
holoprosencephaly 7
holoprosencephaly 8
holoprosencephaly 9
hydranencephaly
hyperpituitarism
hypertension
hypertrophy of breast
hypopituitarism
hypospadias
immune system cancer
imperforate anus
inappropriate ADH syndrome
infant gynecomastia
infiltrating nipple syringomatous adenoma
inflammatory breast carcinoma
intestinal cancer
intestinal disease
intraductal breast myoepitheliosis
intraductal breast neoplasm
intraductal papillary breast neoplasm
intraductal papilloma
invasive ductal carcinoma
invasive lobular carcinoma
invasive tubular breast carcinoma
isolated cleft palate
isolated growth hormone deficiency
isolated growth hormone deficiency type IA
isolated growth hormone deficiency type IB
isolated growth hormone deficiency type II
isolated growth hormone deficiency type III
Klippel-Feil syndrome
lactocele
large cell keratinizing variant squamous cell breast carcinoma
large intestine cancer
leukocyte disease
lipid-rich breast carcinoma
lipid-rich carcinoma
lissencephaly
liver disease
localized intraductal papillomatosis
luminal breast carcinoma
lymphoma
Lynch syndrome
male breast cancer
male reproductive organ cancer
male reproductive system disease
malignant breast melanoma
malignant mediastinal neurogenic neoplasm
malignant mediastinum hemangiopericytoma
mammary Paget's disease
mastitis
Meckel's diverticulum
mediastinal cancer
mediastinal osteogenic sarcoma
mediastinum angiosarcoma
mediastinum ganglioneuroblastoma
mediastinum leiomyoma
mediastinum leiomyosarcoma
mediastinum liposarcoma
mediastinum neuroblastoma
mediastinum neurofibroma
mediastinum rhabdomyosarcoma
mediastinum sarcoma
mediastinum synovial sarcoma
medulloadrenal hyperfunction
melanoma
meningocele
mental depression
microcephaly
microglandular adenosis
microglandular adenosis of breast
microscopic breast papilloma
mixed epithelial/mesenchymal metaplastic breast carcinoma
monogenic disease
mood disorder
myelomeningocele
necrosis of pituitary
Nelson syndrome
neonatal infective mastitis
nervous system cancer
nervous system disease
neural tube defect
neurodegenerative disease
nipple carcinoma
nipple duct carcinoma
nipple neoplasm
non-Hodgkin lymphoma
non-proliferative fibrocystic change of the breast
Norman-Roberts syndrome
nutrition disease
obesity
omphalocele
oncocytic breast carcinoma
organ system cancer
orofacial cleft
ovarian cancer
ovarian disease
overnutrition
panhypopituitarism
parietal foramina
pericardial effusion
pericarditis
pericardium disease
periductal breast myoepitheliosis
periventricular nodular heterotopia
physical disorder
pituitary apoplexy
pituitary-dependent Cushing's disease
pituitary gland disease
pituitary hypoplasia
pituitary infarct
Poland syndrome
polydactyly
posterior mediastinum cancer
pregnancy adenoma
primary autosomal dominant microcephaly 18
primary autosomal recessive microcephaly
primary autosomal recessive microcephaly 1
primary autosomal recessive microcephaly 10
primary autosomal recessive microcephaly 11
primary autosomal recessive microcephaly 12
primary autosomal recessive microcephaly 13
primary autosomal recessive microcephaly 14
primary autosomal recessive microcephaly 15
primary autosomal recessive microcephaly 16
primary autosomal recessive microcephaly 17
primary autosomal recessive microcephaly 19
primary autosomal recessive microcephaly 2 with or without cortical malformations
primary autosomal recessive microcephaly 3
primary autosomal recessive microcephaly 4
primary autosomal recessive microcephaly 5
primary autosomal recessive microcephaly 6
primary autosomal recessive microcephaly 7
primary autosomal recessive microcephaly 8
primary autosomal recessive microcephaly 9
primary hyperaldosteronism
primary microcephaly
primary pigmented nodular adrenocortical disease
progesterone-receptor negative breast cancer
progesterone-receptor positive breast cancer
proliferative type fibrocystic change of breast
prostate cancer
prostate disease
Proteus syndrome
radioulnar synostosis
renal-hepatic-pancreatic dysplasia
reproductive organ cancer
reproductive system disease
right atrial isomerism
sclerosing adenosis of breast
sclerosing breast papilloma
sebaceous breast carcinoma
Sheehan syndrome
situs inversus
solitary cyst of breast
specific developmental disorder
spina bifida
spina bifida occulta
spindle cell variant squamous cell breast carcinoma
sporadic breast cancer
subareolar duct papillomatosis
subcortical band heterotopia
synchronous bilateral breast carcinoma
syndrome
tauopathy
thoracic benign neoplasm
thoracic cancer
thoracic disease
triple-receptor negative breast cancer
vascular disease
visceral heterotaxy
Waterhouse-Friderichsen syndrome
Weaver syndrome
X-linked adrenal hypoplasia congenita
X-linked cleft palate with or without ankyloglossia