Gene expression patterns and TP53 mutations are associated with HPV RNA status, lymph node metastasis, and survival in head and neck cancer (clinical Dataset)

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"GW_220"	"GW_220 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_220 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_220"	"M"	66,0506502395619	"Yes"	35	"1 to 30"	"Primary"	"Oropharynx"	"IVA"	"4a"	"2a"	0	"multi"	"Negative"	"DNA-"	324	TRUE	324	TRUE	"Mesenchymal 3"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_221"	"GW_221 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_221 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_221"	"M"	44,3039014373717	"Yes"	15	"31 to 60"	"Primary"	"Oropharynx"	"IVA"	"4a"	"2c"	0	"multi"	"Negative"	"DNA-"	1115	FALSE	653	TRUE	"Classical 2"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_222"	"GW_222 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_222 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_222"	"M"	52,4298425735797	"Yes"	40	"31 to 60"	"Primary"	"Cavum Oris"	"IVA"	"3"	"2b"	0	"multi"	"Negative"	"DNA-"	279	TRUE	279	TRUE	"Basal 4"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	"Disruptive"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_223"	"GW_223 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_223 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_223"	"M"	48,3613963039014	"Yes"	35	">60"	"Primary"	"Oropharynx"	"IVA"	"4a"	"2b"	0	"multi"	"Negative"	"DNA-"	741	FALSE	405	TRUE	"Basal 4"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_224"	"GW_224 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_224 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_224"	"M"	70,4010951403149	"Yes"	15	"1 to 30"	"Primary"	"Cavum Oris"	"IVA"	"2"	"2b"	0	"multi"	"HPV16"	"DNA+RNA+"	764	FALSE	764	FALSE	"Atypical IR 1"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_225"	"GW_225 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_225 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_225"	"M"	57,8370978781656	"Yes"	45	">60"	"Primary"	"Cavum Oris"	"III"	"2"	"1"	0	"multi"	"Negative"	"DNA-"	769	FALSE	769	FALSE	"Classical 2"	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_226"	"GW_226 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_226 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_226"	"F"	35,3401779603012	"Yes"	4	"1 to 30"	"Primary"	"Cavum Oris"	"I"	"1"	"0"	0	"mono"	"Negative"	"DNA-"	751	FALSE	751	FALSE	"Basal 4"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_227"	"GW_227 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_227 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_227"	"F"	82,0889801505818	"No"	0	"no"	"Primary"	"Cavum Oris"	"IVA"	"4a"	"2c"	0	"mono"	"Negative"	"DNA-"	212	TRUE	158	TRUE	"Basal 4"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"Disruptive"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_228"	"GW_228 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_228 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_228"	"M"	68,1505817932923	"Yes"	40	">60"	"Primary"	"Oropharynx"	"IVB"	"3"	"3"	0	"mono"	"Negative"	"DNA-"	325	TRUE	325	TRUE	"Atypical IR 1"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_229"	"GW_229 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_229 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_229"	"F"	59,0417522245038	"Yes"	22,5	"31 to 60"	"Primary"	"Cavum Oris"	"IVA"	"4a"	"2c"	0	"multi"	"Negative"	"DNA-"	616	TRUE	616	TRUE	"Mesenchymal 3"	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_230"	"GW_230 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_230 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_230"	"M"	61,1416837782341	"Yes"	30	">60"	"Primary"	"Oropharynx"	"IVA"	"2"	"2b"	0	"mono"	"HPV16"	"DNA+RNA+"	776	FALSE	776	FALSE	"Atypical IR 1"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_231"	"GW_231 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_231 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_231"	"M"	70,0862422997947	"Yes"	50	"no"	"Primary"	"Cavum Oris"	"IVA"	"4a"	"2c"	0	"multi"	"Negative"	"DNA-"	825	FALSE	825	FALSE	"Mesenchymal 3"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	"Non-disruptive"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_233"	"GW_233 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_233 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_233"	"M"	58,6639288158795	"Yes"	75	"1 to 30"	"Primary"	"Oropharynx"	"IVA"	"2"	"2c"	0	"multi"	"Negative"	"DNA-"	1357	FALSE	1357	FALSE	"Mesenchymal 3"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"Non-disruptive"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_234"	"GW_234 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_234 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_234"	"F"	46,5106091718001	"Yes"	68	">60"	"Primary"	"Cavum Oris"	"IVA"	"3"	"2c"	0	"multi"	"Negative"	"DNA-"	1063	TRUE	1035	TRUE	"Mesenchymal 3"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	"Disruptive"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_235"	"GW_235 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_235 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_235"	"M"	59,4004106776181	"Yes"	55	">60"	"Primary"	"Cavum Oris"	"IVA"	"4a"	"2b"	0	"mono"	"Negative"	"DNA-"	294	TRUE	157	TRUE	"Basal 4"	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	"Disruptive"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_236"	"GW_236 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_236 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_236"	"M"	53,2731006160164	"Yes"	30	"31 to 60"	"Primary"	"Cavum Oris"	"I"	"1"	"0"	0	"mono"	"Negative"	"DNA-"	680	FALSE	680	FALSE	"Basal 4"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"Non-disruptive"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_237"	"GW_237 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_237 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_237"	"M"	74,943189596167	"Yes"	40	"no"	"Primary"	"Oropharynx"	"IVB"	"4b"	"2c"	0	"mono"	"HPV16"	"DNA+RNA+"	689	FALSE	142	TRUE	"Basal 4"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_238"	"GW_238 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_238 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_238"	"F"	59,8932238193018	"Yes"	10,3	"1 to 30"	"Primary"	"Oropharynx"	"III"	"2"	"1"	0	"multi"	"HPV16"	"DNA+RNA+"	657	FALSE	657	FALSE	"Mesenchymal 3"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_239"	"GW_239 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_239 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_239"	"M"	60,5475701574264	"Yes"	45	">60"	"Primary"	"Oropharynx"	"IVA"	"4a"	"2b"	0	"mono"	"Negative"	"DNA-"	366	TRUE	366	TRUE	"Mesenchymal 3"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"Non-disruptive"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_240"	"GW_240 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_240 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_240"	"M"	69,8617385352498	"Yes"	60	"31 to 60"	"Primary"	"Oropharynx"	"IVB"	"4a"	"3"	0	"multi"	"HPV16"	"DNA+RNA+"	611	TRUE	611	TRUE	"Atypical IR 1"	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_241"	"GW_241 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_241 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_241"	"M"	61,3497604380561	"Yes"	40	"31 to 60"	"Primary"	"Oropharynx"	"II"	"2"	"0"	0	"multi"	"HPV16"	"DNA+RNA-"	665	FALSE	665	FALSE	"Mesenchymal 3"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"Non-disruptive"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_242"	"GW_242 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_242 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_242"	"M"	68,9363449691992	"Yes"	50	"31 to 60"	"Primary"	"Oropharynx"	"IVA"	"1"	"2b"	0	"mono"	"HPV16"	"DNA+RNA-"	701	FALSE	330	TRUE	"Basal 4"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_243"	"GW_243 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_243 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_243"	"M"	58,3381245722108	"Yes"	15	"no"	"Primary"	"Oropharynx"	"IVA"	"4a"	"2b"	0	"mono"	"HPV16"	"DNA+RNA+"	657	FALSE	657	FALSE	"Atypical IR 1"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_244"	"GW_244 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_244 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_244"	"F"	70,113620807666	"Yes"	50	"no"	"Primary"	"Cavum Oris"	"IVA"	"4a"	"0"	0	"multi"	"Negative"	"DNA-"	632	FALSE	632	FALSE	"Mesenchymal 3"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_245"	"GW_245 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_245 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_245"	"M"	78,8090349075975	"Yes"	38	">60"	"Primary"	"Oropharynx"	"IVA"	"1"	"2c"	0	"mono"	"Negative"	"DNA-"	161	TRUE	161	TRUE	"Mesenchymal 3"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"total RNA"	"biotin"	""	"GPL10558"
"GW_246"	"GW_246 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_246 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_246"	"M"	58,7049965776865	"Yes"	40	">60"	"Primary"	"Oropharynx"	"IVC"	"3"	"3"	1	"multi"	"Negative"	"DNA-"	415	TRUE	189	TRUE	"Basal 4"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"total RNA"	"biotin"	""	"GPL10558"
"GW_247"	"GW_247 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_247 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_247"	"M"	76,0766598220397	"Yes"	25	"31 to 60"	"Primary"	"Cavum Oris"	"IVA"	"4a"	"1"	0	"mono"	"Negative"	"DNA-"	619	FALSE	619	FALSE	"Mesenchymal 3"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"total RNA"	"biotin"	""	"GPL10558"
"GW_248"	"GW_248 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_248 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_248"	"M"	54,3162217659138	"No"	0	"31 to 60"	"Primary"	"Oropharynx"	"IVA"	"2"	"2b"	0	"multi"	"HPV16"	"DNA+RNA+"	605	FALSE	605	FALSE	"Atypical IR 1"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"total RNA"	"biotin"	""	"GPL10558"
"GW_249"	"GW_249 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_249 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_249"	"F"	85,719370294319	"No"	0	"1 to 30"	"Primary"	"Cavum Oris"	"IVA"	"4a"	"2c"	0	"palliative"	"Negative"	"DNA-"	652	FALSE	652	FALSE	"Classical 2"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"Non-disruptive"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_250"	"GW_250 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_250 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_250"	"M"	60,1177275838467	"Yes"	60	">60"	"Primary"	"Larynx"	"II"	"2"	"0"	0	"multi"	"Negative"	"DNA-"	643	FALSE	643	FALSE	"Classical 2"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_251"	"GW_251 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_251 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_251"	"M"	49,2128678986995	"Yes"	45	"1 to 30"	"Primary"	"Hypopharynx"	"IVA"	"4a"	"2c"	0	"multi"	"HPV16"	"DNA+RNA-"	603	FALSE	603	FALSE	"Mesenchymal 3"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_253"	"GW_253 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_253 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_253"	"F"	69,9958932238193	"No"	0	">60"	"Primary"	"Hypopharynx"	"IVA"	"4a"	"0"	0	"multi"	"Other HPV"	NA	1210	TRUE	159	TRUE	"Mesenchymal 3"	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_255"	"GW_255 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_255 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_255"	"M"	85,6454483230664	"Yes"	25	"no"	"Relapse"	"Hypopharynx"	"II"	"2"	"0"	0	"multi"	"Negative"	"DNA-"	510	TRUE	510	TRUE	"Atypical IR 1"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"Non-disruptive"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_256"	"GW_256 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_256 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_256"	"M"	55,3264887063655	"Yes"	30	"31 to 60"	"Secondary"	"Hypopharynx"	"I"	"1"	"0"	0	"multi"	"Negative"	"DNA-"	662	TRUE	662	TRUE	"Basal 4"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_257"	"GW_257 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_257 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_257"	"M"	69,8973305954825	"Yes"	40	">60"	"Secondary"	"Hypopharynx"	"III"	"3"	"0"	0	"multi"	"Negative"	"DNA-"	188	TRUE	188	TRUE	"Classical 2"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"total RNA"	"biotin"	""	"GPL10558"
"GW_258"	"GW_258 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_258 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_258"	"M"	70,0506502395619	"Yes"	30	"1 to 30"	"Secondary"	"Cavum Oris"	"IVA"	"4a"	"0"	0	"mono"	"Negative"	"DNA-"	46	TRUE	46	TRUE	"Atypical IR 1"	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"Non-disruptive"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_262"	"GW_262 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_262 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_262"	"M"	66,8884325804244	"Yes"	60	"31 to 60"	"Secondary"	"Larynx"	"IVA"	"4a"	"0"	0	"multi"	"Negative"	"DNA-"	783	FALSE	364	TRUE	"Classical 2"	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"Disruptive"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_263"	"GW_263 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_263 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_263"	"M"	74,3572895277207	"Yes"	55	"31 to 60"	"Secondary"	"Cavum Oris"	"IVA"	"4a"	"0"	0	"multi"	"Negative"	"DNA-"	1067	FALSE	1067	FALSE	"Mesenchymal 3"	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_265"	"GW_265 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_265 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_265"	"M"	62,6721423682409	"Yes"	50	">60"	"Secondary"	"Larynx"	"IVC"	"3"	"0"	1	"mono"	"Negative"	"DNA-"	344	TRUE	289	TRUE	"Basal 4"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"total RNA"	"biotin"	""	"GPL10558"
"GW_266"	"GW_266 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_266 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_266"	"F"	62,5653661875428	"Yes"	10	"no"	"Secondary"	"Larynx"	"III"	"3"	"0"	0	"multi"	"Negative"	"DNA-"	833	FALSE	760	TRUE	"Basal 4"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_268"	"GW_268 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_268 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_268"	"M"	57,8425735797399	"Yes"	160	">60"	"Secondary"	"Cavum Oris"	"IVA"	"4a"	"0"	0	"multi"	"Negative"	"DNA-"	805	FALSE	603	TRUE	"Basal 4"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"total RNA"	"biotin"	""	"GPL10558"
"GW_269"	"GW_269 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_269 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_269"	"F"	87,0444900752909	"No"	0	"1 to 30"	"Relapse"	"Cavum Oris"	"III"	"3"	"0"	0	"multi"	"Negative"	"DNA-"	154	TRUE	154	TRUE	"Basal 4"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"total RNA"	"biotin"	""	"GPL10558"
"GW_271"	"GW_271 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_271 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_271"	"M"	67,605749486653	"Yes"	34	"1 to 30"	"Secondary"	"Larynx"	"II"	"2"	"0"	0	"mono"	"Negative"	"DNA-"	734	FALSE	725	TRUE	"Classical 2"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"total RNA"	"biotin"	""	"GPL10558"
"GW_272"	"GW_272 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_272 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_272"	"F"	50,7268993839836	"Yes"	30	"31 to 60"	"Relapse"	"Hypopharynx"	"IVA"	"4a"	"0"	0	"multi"	"Negative"	"DNA-"	198	TRUE	193	TRUE	"Mesenchymal 3"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"total RNA"	"biotin"	""	"GPL10558"
"GW_275"	"GW_275 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_275 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_275"	"M"	52,6242299794661	"Yes"	18	"no"	"Primary"	NA	"IVA"	"3"	"2a"	0	"mono"	"Negative"	"DNA-"	578	TRUE	578	TRUE	"Atypical IR 1"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_280"	"GW_280 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_280 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_280"	"M"	49,9876796714579	"Yes"	30	">60"	"Primary"	"Oropharynx"	"IVA"	"4a"	"2b"	0	"multi"	"Negative"	"DNA-"	346	TRUE	346	TRUE	"Basal 4"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"total RNA"	"biotin"	""	"GPL10558"
"GW_281"	"GW_281 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_281 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_281"	"M"	38,1437371663244	"Yes"	17	"1 to 30"	"Primary"	"Cavum Oris"	"IVA"	"2"	"2b"	0	"multi"	"Negative"	"DNA-"	596	FALSE	404	TRUE	"Atypical IR 1"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"total RNA"	"biotin"	""	"GPL10558"
"GW_282"	"GW_282 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_282 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_282"	"M"	50,4640657084189	"Yes"	15	">60"	"Primary"	"Oropharynx"	"IVA"	"4a"	"0"	0	"multi"	"Negative"	"DNA-"	590	FALSE	590	FALSE	"Basal 4"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"total RNA"	"biotin"	""	"GPL10558"
"GW_283"	"GW_283 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_283 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_283"	"M"	41,6892539356605	"Yes"	20,3	"31 to 60"	"Primary"	"Cavum Oris"	"IVA"	"4a"	"2c"	0	"multi"	"HPV16"	"DNA+RNA-"	596	FALSE	596	FALSE	"Mesenchymal 3"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"total RNA"	"biotin"	""	"GPL10558"
"GW_284"	"GW_284 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_284 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_284"	"M"	71,2388774811773	"Yes"	40	"1 to 30"	"Primary"	"Oropharynx"	"IVA"	"2"	"2b"	0	"multi"	"Negative"	"DNA-"	358	TRUE	311	TRUE	"Mesenchymal 3"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"total RNA"	"biotin"	""	"GPL10558"
"GW_285"	"GW_285 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_285 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_285"	"M"	52,2847364818617	"Yes"	30	"1 to 30"	"Primary"	"Oropharynx"	"II"	"2"	"0"	0	"mono"	"HPV16"	"DNA+RNA+"	590	FALSE	590	FALSE	"Basal 4"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_286"	"GW_286 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_286 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_286"	"M"	53,7577002053388	"Yes"	30	"31 to 60"	"Primary"	"Cavum Oris"	"I"	"1"	"0"	0	"palliative"	"Negative"	"DNA-"	582	FALSE	582	FALSE	"Mesenchymal 3"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"total RNA"	"biotin"	""	"GPL10558"
"GW_287"	"GW_287 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_287 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_287"	"M"	59,1485284052019	"No"	0	"1 to 30"	"Primary"	"Oropharynx"	"III"	"3"	"1"	0	"mono"	"Negative"	"DNA-"	581	FALSE	581	FALSE	"Atypical IR 1"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_288"	"GW_288 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_288 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_288"	"F"	73,3853524982888	"Yes"	7,5	"1 to 30"	"Primary"	"Oropharynx"	"IVA"	"1"	"2c"	0	"multi"	"Negative"	"DNA-"	553	FALSE	553	FALSE	"Basal 4"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"total RNA"	"biotin"	""	"GPL10558"
"GW_289"	"GW_289 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_289 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_289"	"M"	51,6112251882272	"Yes"	35	">60"	"Primary"	"Cavum Oris"	"IVA"	"1"	"2c"	0	"multi"	"Negative"	"DNA-"	574	FALSE	574	FALSE	"Classical 2"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_290"	"GW_290 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_290 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_290"	"M"	56,2518822724162	"Yes"	40	">60"	"Primary"	"Hypopharynx"	"III"	"2"	"1"	0	"mono"	"Negative"	"DNA-"	605	FALSE	132	TRUE	"Classical 2"	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	"Disruptive"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_292"	"GW_292 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_292 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_292"	"F"	55,4469541409993	"Yes"	7,5	"1 to 30"	"Primary"	"Oropharynx"	"IVA"	"4a"	"0"	0	"multi"	"Other HPV"	NA	603	FALSE	603	FALSE	"Mesenchymal 3"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"total RNA"	"biotin"	""	"GPL10558"
"GW_293"	"GW_293 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_293 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_293"	"M"	53,6974674880219	"Yes"	60	"1 to 30"	"Primary"	"Larynx"	"II"	"2"	"0"	0	"mono"	"Negative"	"DNA-"	582	FALSE	582	FALSE	"Classical 2"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"total RNA"	"biotin"	""	"GPL10558"
"GW_294"	"GW_294 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_294 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_294"	"M"	45,9822039698836	"No"	0	"1 to 30"	"Primary"	"Hypopharynx"	"IVA"	"2"	"2a"	0	"multi"	"HPV16"	"DNA+RNA+"	577	FALSE	577	FALSE	"Atypical IR 1"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_295"	"GW_295 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_295 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_295"	"M"	72,9390828199863	"Yes"	1	"1 to 30"	"Primary"	"Oropharynx"	"IVA"	"3"	"2b"	0	"multi"	"HPV16"	"DNA+RNA-"	20	TRUE	20	TRUE	"Mesenchymal 3"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"Disruptive"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_296"	"GW_296 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_296 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_296"	"M"	47,9507186858316	"Yes"	13,5	">60"	"Primary"	"Hypopharynx"	"IVA"	"4a"	"2b"	0	"multi"	"Negative"	"DNA-"	566	FALSE	566	FALSE	"Classical 2"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_297"	"GW_297 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_297 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_297"	"M"	43,2799452429843	"Yes"	40	"1 to 30"	"Primary"	"Cavum Oris"	"III"	"1"	"1"	0	"mono"	"Negative"	"DNA-"	596	FALSE	271	TRUE	"Atypical IR 1"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"Disruptive"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_298"	"GW_298 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_298 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_298"	"M"	58,031485284052	"Yes"	35	">60"	"Primary"	"Cavum Oris"	"IVA"	"4a"	"2a"	0	"mono"	"Negative"	"DNA-"	672	FALSE	249	TRUE	"Mesenchymal 3"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"Non-disruptive"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_299"	"GW_299 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_299 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_299"	"F"	64,0766598220397	"Yes"	7,5	"1 to 30"	"Primary"	"Larynx"	"IVA"	"4a"	"2c"	0	"mono"	"Negative"	"DNA-"	552	FALSE	552	FALSE	"Basal 4"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"Non-disruptive"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_300"	"GW_300 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_300 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_300"	"M"	44,7173169062286	"No"	0	"no"	"Primary"	NA	"IVB"	"4b"	"2c"	0	"multi"	"Negative"	"DNA-"	549	FALSE	549	FALSE	"Atypical IR 1"	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_301"	"GW_301 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_301 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_301"	"F"	44,8870636550308	"No"	0	"no"	"Secondary"	NA	"IVB"	"4b"	"0"	0	"multi"	"Negative"	"DNA-"	546	FALSE	476	TRUE	"Atypical IR 1"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"total RNA"	"biotin"	""	"GPL10558"
"GW_302"	"GW_302 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_302 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_302"	"M"	51,4250513347023	"Yes"	61	"31 to 60"	"Primary"	"Cavum Oris"	"II"	"2"	"0"	0	"mono"	"Negative"	"DNA-"	563	FALSE	563	FALSE	"Basal 4"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"Disruptive"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_303"	"GW_303 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_303 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_303"	"M"	51,7973990417522	"Yes"	45	"31 to 60"	"Primary"	"Larynx"	"II"	"2"	"0"	0	"mono"	"Negative"	"DNA-"	623	FALSE	623	FALSE	"Basal 4"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_305"	"GW_305 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_305 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_305"	"M"	74,4969199178645	"Yes"	44	"31 to 60"	"Primary"	"Larynx"	"IVA"	"3"	"2b"	0	"multi"	"Negative"	"DNA-"	597	FALSE	597	FALSE	"Atypical IR 1"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"WT"	0	"total RNA"	"biotin"	""	"GPL10558"
"GW_306"	"GW_306 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_306 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_306"	"M"	59,3593429158111	"Yes"	40	">60"	"Secondary"	"Oropharynx"	"I"	"1"	"0"	0	"multi"	"Negative"	"DNA-"	11	TRUE	11	TRUE	"Atypical IR 1"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"total RNA"	"biotin"	""	"GPL10558"
"GW_307"	"GW_307 Head and neck squamous cell carcinoma Illumina HT12v4"	"GW_307 Head and neck squamous cell carcinoma"	"Homo sapiens"	""	"GW_307"	"M"	61,3990417522245	"No"	0	"1 to 30"	"Secondary"	"Cavum Oris"	"II"	"2"	"0"	0	"multi"	"Negative"	"DNA-"	577	FALSE	162	TRUE	"Basal 4"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	"Disruptive"	0	"total RNA"	"biotin"	""	"GPL10558"

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